STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00280FHA domain-containing protein; COG1716 FOG: FHA domain. (143 aa)    
Predicted Functional Partners:
RAM_00255
COG0515 Serine/threonine protein kinase.
 
 
 
 0.978
RAM_00265
Peptidoglycan glycosyl transferase; COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
   
 0.950
FtsW
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
   
 0.947
RAM_00285
FHA domain-containing protein; COG1716 FOG: FHA domain.
 
   
 0.938
kgd
Alpha-ketoglutarate decarboxylase; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
   
 
 0.926
RAM_00260
COG0515 Serine/threonine protein kinase.
 
 
 
 0.918
RAM_00275
COG0631 Serine/threonine protein phosphatase.
 
 
 0.888
RAM_11800
COG0515 Serine/threonine protein kinase.
 
 
 
 0.878
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
  
  
 0.722
RAM_04415
DEAD/DEAH box helicase; COG4581 Superfamily II RNA helicase.
  
     0.613
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.