STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00305Penicillin acylase; COG2366 Protein related to penicillin acylase. (1056 aa)    
Predicted Functional Partners:
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.680
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.680
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.680
MetB
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
  
    0.606
RAM_17915
Hypothetical protein.
  
     0.575
RAM_00300
Peptidylprolyl isomerase; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
       0.513
RAM_12095
COG1309 Transcriptional regulator.
  
     0.489
RAM_27715
Polyketide synthesis cyclase.
  
     0.476
ActI
3-oxoacyl-ACP synthase acylcarrier protein; COG0236 Acyl carrier protein.
 
    0.469
RAM_38935
COG0642 Signal transduction histidine kinase.
  
   
 0.451
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.