STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00335ABC dipeptide/oligopeptide transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (486 aa)    
Predicted Functional Partners:
RAM_00340
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.971
RAM_00345
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.967
RAM_00355
COG4608 ABC-type oligopeptide transport system, ATPase component.
 
  
 0.943
RAM_00350
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
  
 0.935
RAM_35545
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG4166 ABC-type oligopeptide transport system, periplasmic component.
 
  
  0.731
RAM_23705
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.713
RAM_23710
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.707
RAM_45665
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.704
RAM_17620
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.703
RAM_17615
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.690
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.