STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00340COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (310 aa)    
Predicted Functional Partners:
RAM_00355
COG4608 ABC-type oligopeptide transport system, ATPase component.
 
 
 0.978
RAM_00345
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.976
RAM_17620
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.976
RAM_00335
ABC dipeptide/oligopeptide transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
 0.975
RAM_00350
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
 
 
 0.972
RAM_19060
Oligopeptide/dipeptide ABC transporter ATPase/permease; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 
 0.956
RAM_41225
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.898
RAM_41235
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.898
RAM_42075
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.898
RAM_23710
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.897
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.