STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00360COG1012 NAD-dependent aldehyde dehydrogenases. (414 aa)    
Predicted Functional Partners:
RAM_00365
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
   0.834
GatA
Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
       0.773
kgd
Alpha-ketoglutarate decarboxylase; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
  
 0.590
RAM_04490
COG1012 NAD-dependent aldehyde dehydrogenases.
 
     0.579
RAM_00335
ABC dipeptide/oligopeptide transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
   
 0.565
RAM_00355
COG4608 ABC-type oligopeptide transport system, ATPase component.
     
 0.504
RAM_00345
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
     
 0.501
RAM_00350
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase.
     
 0.501
RAM_00340
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
     
 0.494
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
 0.455
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.