STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CitECOG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family. (287 aa)    
Predicted Functional Partners:
CitE-2
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
 
    
0.841
RAM_39870
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
 
  
 0.698
RAM_05575
COG2030 Acyl dehydratase.
 
  
 0.536
Qor-3
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
  
 0.535
FucA
L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.519
AraD
COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.519
RAM_37220
Aldolase II superfamily protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.519
FucA-2
L-fuculose-phosphate aldolase; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
   
    0.519
PrpD
2-methylcitrate dehydratase; COG2079 Uncharacterized protein involved in propionate catabolism.
 
  
 0.486
Pyk
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
   
  
 0.434
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.