STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00460Aminoglycoside phosphotransferase; COG2334 Putative homoserine kinase type II (protein kinase fold). (295 aa)    
Predicted Functional Partners:
RAM_00455
COG1396 Predicted transcriptional regulators.
 
     0.893
RAM_00445
Hypothetical protein.
 
     0.803
RAM_00605
Hypothetical protein.
  
   
 0.752
RAM_38150
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.687
RAM_47525
Hypothetical protein.
  
     0.671
RAM_02570
Hypothetical protein.
  
     0.666
RAM_08475
Hypothetical protein.
  
     0.650
RAM_00450
Hypothetical protein.
 
     0.637
RAM_04060
Hypothetical protein.
  
     0.624
RAM_00655
Hypothetical protein.
  
     0.618
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.