STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PcoCCopper resistance protein; COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC. (173 aa)    
Predicted Functional Partners:
RAM_00465
COG1276 Putative copper export protein.
 
  
 0.927
RAM_00475
COG4549 Uncharacterized protein conserved in bacteria.
 
  
 0.849
RAM_35050
COG3336 Predicted membrane protein.
 
  
 0.819
RAM_33540
Integral membrane protein; COG3182 Uncharacterized iron-regulated membrane protein.
  
    0.629
RAM_12640
Hypothetical protein.
   
    0.604
RAM_42145
Iron-dependent peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.593
RAM_28835
Peroxidase; COG2837 Predicted iron-dependent peroxidase.
  
  
 0.531
RAM_36120
Peroxidase; COG2837 Predicted iron-dependent peroxidase.
  
  
 0.531
RAM_38995
COG2837 Predicted iron-dependent peroxidase.
  
  
 0.531
RAM_00480
Hypothetical protein.
 
     0.511
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.