STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00475COG4549 Uncharacterized protein conserved in bacteria. (255 aa)    
Predicted Functional Partners:
PcoC-5
Copper resistance protein; COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC.
 
  
 0.974
RAM_00465
COG1276 Putative copper export protein.
 
  
 0.905
PcoC
Copper resistance protein; COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC.
 
  
 0.866
PcoC-3
Copper resistance protein; COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC.
 
  
 0.758
RAM_35050
COG3336 Predicted membrane protein.
  
  
 0.708
PcoC-4
Copper resistance protein; COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC.
  
  
 0.695
PcoC-2
Copper resistance protein.
  
  
 0.685
RAM_00480
Hypothetical protein.
 
     0.679
RAM_26580
Hypothetical protein; COG5637 Predicted integral membrane protein.
  
     0.526
RAM_15865
Hypothetical protein; COG5637 Predicted integral membrane protein.
  
     0.517
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.