STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00485COG1174 ABC-type proline/glycine betaine transport systems, permease component. (215 aa)    
Predicted Functional Partners:
RAM_00500
COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 
 0.999
RAM_00490
COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.
 0.995
RAM_40905
COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.
 0.980
RAM_02250
COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 
 
 0.972
RAM_40890
COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein).
 
 
 0.963
RAM_00495
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
 
    
0.908
RAM_40900
COG1174 ABC-type proline/glycine betaine transport systems, permease component.
  
     0.769
SsuC-6
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
     0.455
RAM_00480
Hypothetical protein.
       0.429
SsuC-3
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
     0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.