STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00625Hypothetical protein. (589 aa)    
Predicted Functional Partners:
RAM_03795
Beta-lactamase-like protein; COG2367 Beta-lactamase class A.
  
     0.667
RAM_00630
Hypothetical protein.
 
     0.571
RAM_00610
COG0438 Glycosyltransferase.
 
   0.517
RAM_11750
Hypothetical protein.
  
 
   0.495
RAM_00620
Hypothetical protein.
       0.481
DraG
COG1397 ADP-ribosylglycohydrolase.
  
     0.481
RAM_40005
COG2246 Predicted membrane protein.
 
  
 0.466
RAM_16960
Esterase.
  
  0.465
RAM_07020
Hypothetical protein.
  
     0.456
RAM_33335
Hypothetical protein.
  
     0.453
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.