STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00650COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. (553 aa)    
Predicted Functional Partners:
RAM_00655
Hypothetical protein.
 
     0.672
RAM_05035
Hypothetical protein.
 
     0.636
RAM_47460
Hypothetical protein.
  
     0.595
MutM
COG0266 Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
       0.527
RAM_05430
Hypothetical protein.
 
   0.488
RAM_02505
Hypothetical protein.
  
     0.472
RAM_47660
Hypothetical protein.
  
     0.468
RAM_11240
COG3688 Predicted RNA-binding protein containing a PIN domain.
 
    0.466
RAM_47810
Hypothetical protein.
  
 
   0.454
RAM_00465
COG1276 Putative copper export protein.
  
     0.452
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.