STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SohBCOG0616 Periplasmic serine proteases (ClpP class). (269 aa)    
Predicted Functional Partners:
RAM_00665
Two-component system histidine kinase; COG3275 Putative regulator of cell autolysis.
       0.743
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
      0.624
RAM_00655
Hypothetical protein.
 
     0.601
RAM_05595
COG3428 Predicted membrane protein.
 
    0.520
RAM_40325
Hypothetical protein.
  
    0.487
RAM_00700
Hypothetical protein.
 
     0.484
RAM_00675
Endo-1,3-beta-glucanase; COG2273 Beta-glucanase/Beta-glucan synthetase.
       0.474
RAM_40330
COG3428 Predicted membrane protein.
 
    0.470
RAM_29635
Hypothetical protein; COG0457 FOG: TPR repeat.
  
  
 0.460
RAM_35865
Hypothetical protein; COG1796 DNA polymerase IV (family X).
       0.452
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.