STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00675Endo-1,3-beta-glucanase; COG2273 Beta-glucanase/Beta-glucan synthetase. (462 aa)    
Predicted Functional Partners:
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
     0.602
RAM_12545
COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
    0.569
RAM_01400
COG3325 Chitinase.
  
    0.565
RAM_38640
COG3325 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
    0.558
AbfA-2
alpha-N-arabinofuranosidase; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
     0.541
RAM_26455
COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
 
   
 0.532
RAM_01405
Chitinase.
 
   
 0.514
RAM_00680
COG3279 Response regulator of the LytR/AlgR family.
       0.509
RAM_37790
Glycoside hydrolase family 48.
 
   
 0.496
AbfA-10
alpha-N-arabinofuranosidase.
 
     0.481
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.