STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00690COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (596 aa)    
Predicted Functional Partners:
RAM_00680
COG3279 Response regulator of the LytR/AlgR family.
 
     0.937
RAM_00685
Hypothetical protein.
 
     0.899
RAM_08050
Clumping factor B; COG3162 Predicted membrane protein.
 
  
 0.888
RAM_12660
COG3162 Predicted membrane protein.
 
  
 0.871
RAM_00665
Two-component system histidine kinase; COG3275 Putative regulator of cell autolysis.
 
     0.762
RAM_08070
Two-component system histidine kinase; COG3275 Putative regulator of cell autolysis.
 
     0.669
RAM_08065
COG3279 Response regulator of the LytR/AlgR family.
 
     0.661
RAM_00700
Hypothetical protein.
       0.558
RAM_00695
Rhodanese-like protein; COG0607 Rhodanese-related sulfurtransferase.
       0.545
RAM_00675
Endo-1,3-beta-glucanase; COG2273 Beta-glucanase/Beta-glucan synthetase.
       0.425
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.