STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00705COG1309 Transcriptional regulator. (177 aa)    
Predicted Functional Partners:
RAM_39635
Hypothetical protein.
  
     0.584
RAM_00710
Hypothetical protein.
       0.572
RAM_06840
COG1309 Transcriptional regulator.
  
     0.527
RAM_10350
Methyltransferase; COG0500 SAM-dependent methyltransferases.
  
 
   0.515
RAM_25345
Isomerase.
  
     0.455
RAM_33625
Hypothetical protein.
  
     0.451
RAM_10910
COG1846 Transcriptional regulators.
  
    0.449
RAM_15170
COG1846 Transcriptional regulators.
  
    0.447
RAM_00135
SARP family transcriptional regulator; COG3903 Predicted ATPase.
  
    0.445
EmrB
MFS transporter multidrug resistance protein B; COG0477 Permeases of the major facilitator superfamily.
       0.433
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.