STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00760CAAX amino terminal protease; COG1266 Predicted metal-dependent membrane protease. (270 aa)    
Predicted Functional Partners:
arcA
COG2235 Arginine deiminase.
       0.701
RAM_05760
COG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
 
     0.603
RAM_00510
Hypothetical protein; COG2251 Predicted nuclease (RecB family).
  
     0.585
RAM_00765
Pyridoxamine 5'-phosphate oxidase.
       0.582
RAM_05955
COG1579 Zn-ribbon protein, possibly nucleic acid-binding.
  
     0.559
RAM_10695
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.548
RAM_02380
Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases.
 
     0.497
RAM_00950
Hypothetical protein.
 
     0.490
RAM_35050
COG3336 Predicted membrane protein.
  
     0.487
RAM_00750
Ferritin family protein; Iron-storage protein.
       0.470
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.