STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00765Pyridoxamine 5'-phosphate oxidase. (153 aa)    
Predicted Functional Partners:
arcA
COG2235 Arginine deiminase.
  
    0.651
RAM_00760
CAAX amino terminal protease; COG1266 Predicted metal-dependent membrane protease.
       0.582
SsuD-3
Monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.558
RAM_26540
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.542
RAM_33475
Two-component system response regulator; COG2203 FOG: GAF domain.
 
     0.535
RAM_18575
Hypothetical protein.
  
     0.479
RAM_07600
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
     0.478
RAM_33550
COG3707 Response regulator with putative antiterminator output domain.
  
    0.470
RAM_37985
Hypothetical protein; COG3707 Response regulator with putative antiterminator output domain.
  
     0.458
Hmd-3
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.456
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.