STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00790Von Willebrand factor type A; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain. (602 aa)    
Predicted Functional Partners:
RAM_00785
Hypothetical protein.
       0.821
HmgA
COG3508 Homogentisate 1,2-dioxygenase.
  
    0.614
RAM_00900
Hypothetical protein.
  
     0.546
ChlI
COG1239 Mg-chelatase subunit ChlI.
  
 
 0.513
ChlD
COG1239 Mg-chelatase subunit ChlI.
  
 
 0.513
RAM_05290
COG1396 Predicted transcriptional regulators.
  
     0.423
RAM_42665
DEAD/DEAH box helicase; COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.
  
     0.422
RAM_45695
Hypothetical protein.
  
     0.401
SpoI
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); Belongs to the anti-sigma-factor antagonist family.
  
     0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.