STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00805COG1414 Transcriptional regulator. (214 aa)    
Predicted Functional Partners:
RAM_00800
Hypothetical protein; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
 
   
 0.866
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
  
    0.725
HmgA
COG3508 Homogentisate 1,2-dioxygenase.
  
  
 0.573
RAM_28325
COG1414 Transcriptional regulator.
  
     0.531
RAM_31865
COG1414 Transcriptional regulator.
  
     0.513
RAM_36895
COG1414 Transcriptional regulator.
  
     0.512
RAM_29120
COG1414 Transcriptional regulator.
  
     0.509
RAM_02000
COG1414 Transcriptional regulator.
  
     0.501
RAM_44345
COG1414 Transcriptional regulator.
  
     0.501
RAM_20975
COG1414 Transcriptional regulator.
  
     0.498
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.