STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00860Hypothetical protein. (758 aa)    
Predicted Functional Partners:
RAM_00865
Hypothetical protein; COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
       0.746
RAM_43870
DNA excision repair protein; COG1061 DNA or RNA helicases of superfamily II.
 
     0.583
RAM_46715
Hypothetical protein.
  
     0.567
RAM_00465
COG1276 Putative copper export protein.
  
     0.513
RAM_12640
Hypothetical protein.
  
     0.505
RAM_35925
Hypothetical protein.
  
     0.502
DnaQ
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
       0.498
RAM_01860
TraI.
  
     0.482
RAM_15365
Hypothetical protein; COG0704 Phosphate uptake regulator.
  
     0.480
RAM_24920
Proteasome component.
  
  
 0.460
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.