STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00865Hypothetical protein; COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit. (267 aa)    
Predicted Functional Partners:
RAM_00860
Hypothetical protein.
       0.746
DnaQ
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
     
 0.543
RAM_05325
Acyltransferase; COG1835 Predicted acyltransferases.
  
  
 0.433
RAM_33060
Acyltransferase; COG1835 Predicted acyltransferases.
  
  
 0.427
RAM_36280
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
  
  
 0.426
RAM_05630
COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
    
 0.417
RAM_07850
COG0513 Superfamily II DNA and RNA helicases.
    
 0.417
RAM_10450
COG0513 Superfamily II DNA and RNA helicases.
    
 0.417
RAM_14145
COG3000 Sterol desaturase.
   
    0.416
RAM_40505
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
  
     0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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