STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00925Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family. (205 aa)    
Predicted Functional Partners:
PheA
COG0077 Prephenate dehydratase.
     
 0.884
RAM_00915
Phage tail assembly-like protein; COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1.
     
 0.598
htpX
COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.
  
    0.570
RAM_45560
COG0501 Zn-dependent protease with chaperone function.
  
    0.570
RAM_00930
Hypothetical protein.
       0.516
CobK
COG2099 Precorrin-6x reductase.
  
  
 0.508
CobI
COG2243 Precorrin-2 methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.488
prfA
Peptide chain release factor RF-1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.482
EntC
COG1169 Isochorismate synthase.
     
 0.481
FolP-5
COG0294 Dihydropteroate synthase and related enzymes.
     
 0.455
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.