STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00940COG0477 Permeases of the major facilitator superfamily. (415 aa)    
Predicted Functional Partners:
RAM_25075
COG0477 Permeases of the major facilitator superfamily.
  
     0.661
RAM_00935
Hypothetical protein.
       0.657
RAM_06975
COG0477 Permeases of the major facilitator superfamily.
  
     0.592
RAM_39480
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.540
RAM_00945
COG3824 Uncharacterized protein conserved in bacteria.
       0.533
RAM_00950
Hypothetical protein.
       0.533
RAM_41245
Dipeptide/oligopeptide ABC transporter periplasmic protein; COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.513
RAM_35890
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.498
RAM_39495
Hypothetical protein.
  
    0.491
RAM_00955
Hypothetical protein.
 
     0.457
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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