STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_00990FAD-dependent oxidoreductase; COG0579 Predicted dehydrogenase. (395 aa)    
Predicted Functional Partners:
RAM_10330
Hypothetical protein.
    
   0.694
CoxB
COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
   
 
 0.689
RAM_34985
Hypothetical protein; COG1512 Beta-propeller domains of methanol dehydrogenase type.
    
   0.669
RAM_11175
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
    
   0.610
CoxC
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
    
   0.610
RAM_34990
Hypothetical protein.
    
   0.610
RAM_00995
COG1309 Transcriptional regulator.
       0.557
RAM_01000
Hypothetical protein.
       0.557
kgd
Alpha-ketoglutarate decarboxylase; COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
  
  
 0.548
RAM_44485
Hypothetical protein.
       0.466
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.