STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01000Hypothetical protein. (161 aa)    
Predicted Functional Partners:
RAM_00995
COG1309 Transcriptional regulator.
       0.784
RAM_14780
Hypothetical protein; COG3839 ABC-type sugar transport systems, ATPase components.
  
     0.633
RAM_23360
Hypothetical protein; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
     0.608
RAM_00990
FAD-dependent oxidoreductase; COG0579 Predicted dehydrogenase.
       0.557
RAM_41805
Hypothetical protein; COG2367 Beta-lactamase class A.
  
     0.550
RAM_30735
Hypothetical protein.
  
     0.545
Hmd
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.505
RAM_45780
Two-component system sensor kinase; COG0642 Signal transduction histidine kinase.
  
     0.499
RAM_30740
Hypothetical protein.
  
     0.481
RAM_23780
Signal peptide protein.
  
     0.465
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.