STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01010SARP family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase. (1033 aa)    
Predicted Functional Partners:
RAM_01005
COG1396 Predicted transcriptional regulators.
  
    0.778
RAM_01015
COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
       0.528
GalE
UDP-glucose 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases.
       0.483
RAM_29585
ATPase; COG3903 Predicted ATPase.
  
   
0.481
RAM_01025
Glucosyltransferase; COG0438 Glycosyltransferase.
       0.480
Maa
COG0110 Acetyltransferase (isoleucine patch superfamily).
       0.480
RAM_19805
NTPase containing TPR repeat domain; COG3903 Predicted ATPase.
 
  
 0.465
RAM_08645
NTPase containing TPR repeat domain; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
   
 0.449
RAM_32615
TPR repeat-containing protein; COG3903 Predicted ATPase.
 
     0.437
RAM_35805
LuxR family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
 
  
0.429
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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