STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GalEUDP-glucose 4-epimerase; COG0451 Nucleoside-diphosphate-sugar epimerases. (309 aa)    
Predicted Functional Partners:
Ugd
COG1004 Predicted UDP-glucose 6-dehydrogenase.
 
 0.946
Ugd-2
COG1004 Predicted UDP-glucose 6-dehydrogenase.
 
 0.946
RAM_01015
COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.925
GalU
UTP--glucose-1-phosphate uridylyltransferase; COG1210 UDP-glucose pyrophosphorylase.
 
 
 0.921
Glf
COG0562 UDP-galactopyranose mutase.
    
 0.920
GalT
COG1085 Galactose-1-phosphate uridylyltransferase.
 
 
 0.918
Qdb
UDP-sulfoquinovose synthase; COG0451 Nucleoside-diphosphate-sugar epimerases.
     
  0.900
RAM_01025
Glucosyltransferase; COG0438 Glycosyltransferase.
 
  
 0.898
Maa
COG0110 Acetyltransferase (isoleucine patch superfamily).
 
  
 0.898
RAM_05170
Mannose-1-phosphate guanylyltransferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
  
 0.877
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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