STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01045Aminopeptidase; COG2234 Predicted aminopeptidases. (446 aa)    
Predicted Functional Partners:
RAM_43440
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
   
 0.725
RpoE-3
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
       0.545
RAM_01040
Hypothetical protein.
       0.545
RAM_24885
COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor.
  
     0.526
RAM_14855
Hypothetical protein.
  
     0.521
RAM_07480
COG2272 Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family.
 
 0.504
RAM_18715
Hypothetical protein.
  
     0.503
RAM_22945
SGNH hydrolase; COG2755 Lysophospholipase L1 and related esterases.
  
     0.497
RAM_04595
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
   
 0.487
RAM_34725
Amidohydrolase; COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
     0.485
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.