STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01075COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (464 aa)    
Predicted Functional Partners:
AcpP
COG0236 Acyl carrier protein.
 
   0.956
RAM_01085
Hypothetical protein.
 
   0.956
RAM_01080
Acyl-protein synthetase.
 
   
 0.951
FabG
3-oxoacyl-[acyl-carrier-protein] reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
   0.848
RAM_01090
Integral membrane protein.
 
     0.839
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
 
0.826
LpxA
COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase.
 
     0.809
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.805
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.805
BadA
benzoate-CoA ligase; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
 
 
 0.675
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.