STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01105Hypothetical protein. (605 aa)    
Predicted Functional Partners:
RAM_01110
Hypothetical protein.
 
  
 0.862
RAM_01115
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
       0.770
RAM_47705
Hypothetical protein.
  
     0.768
RAM_47700
Hypothetical protein.
  
   
 0.755
RAM_02030
COG1396 Predicted transcriptional regulators.
  
     0.751
RAM_44900
Hypothetical protein.
  
   
 0.746
RAM_03740
Hypothetical protein.
  
     0.741
RAM_42115
Glyoxalase/bleomycin resistance protein/dioxygenase; COG2764 Uncharacterized protein conserved in bacteria.
  
     0.738
RAM_01185
Hypothetical protein.
  
     0.737
RAM_00890
Hypothetical protein.
  
     0.735
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.