STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01275Hypothetical protein; COG3591 V8-like Glu-specific endopeptidase. (266 aa)    
Predicted Functional Partners:
RAM_01270
RNA-binding S4 domain-containing protein.
       0.740
RAM_25600
Integral membrane protein.
  
     0.536
RAM_01280
Short-chain dehydrogenase/reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.521
RAM_34680
Hypothetical protein.
  
     0.511
RAM_21605
Hypothetical protein.
 
   
 0.505
RAM_01315
Hypothetical protein.
  
     0.477
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
  
     0.440
PucR-2
PucR family transcriptional regulator; COG2508 Regulator of polyketide synthase expression.
  
     0.421
RAM_30480
Phosphoesterase.
  
     0.421
RAM_01605
Esterase/lipase-like protein; COG0627 Predicted esterase.
  
     0.418
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.