STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01295COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism. (527 aa)    
Predicted Functional Partners:
RAM_01290
COG4565 Response regulator of citrate/malate metabolism.
 
 
 0.974
RAM_31130
COG4565 Response regulator of citrate/malate metabolism.
 
 
 0.905
RAM_33265
COG4565 Response regulator of citrate/malate metabolism.
 
 
 0.892
RAM_39025
Serine/threonine phosphatase fused with REC signal receiver domain; COG0784 FOG: CheY-like receiver.
  
 
 0.579
DctA-2
Aerobic C4-dicarboxylate transport protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.538
SsuC
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.524
SsuB
COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
       0.512
SsuA
Sulfonate/nitrate/taurine ABC transporter periplasmic protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
       0.467
DctA
Aerobic C4-dicarboxylate transport protein; COG1301 Na+/H+-dicarboxylate symporters; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.410
RecQ-3
COG0514 Superfamily II DNA helicase.
  
    0.406
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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