STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SsuASulfonate/nitrate/taurine ABC transporter periplasmic protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components. (343 aa)    
Predicted Functional Partners:
SsuC
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.947
SsuB
COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
  
 0.946
SsuC-2
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.535
RAM_00300
Peptidylprolyl isomerase; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
   
    0.524
infA
Translation initiation factor IF-1 infA; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.524
RAM_14315
Peptidylprolyl isomerase; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
   
    0.524
infA-2
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.524
SsuC-5
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.494
PlcC-2
COG3511 Phospholipase C.
  
     0.485
SsuC-6
COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
  
 0.481
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.