STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01335Sporulation and cell division protein SsgA. (134 aa)    
Predicted Functional Partners:
RAM_13950
COG1396 Predicted transcriptional regulators.
  
   
 0.756
RAM_11240
COG3688 Predicted RNA-binding protein containing a PIN domain.
  
     0.671
RAM_26550
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.668
RAM_14550
Hypothetical protein.
  
   
 0.630
RAM_12665
Histidine kinase-like ATPase containing nitrate/nitrite sensor domain; COG0642 Signal transduction histidine kinase.
  
     0.623
RAM_01465
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.601
RAM_11985
COG1396 Predicted transcriptional regulators.
  
     0.599
RAM_30380
COG1396 Predicted transcriptional regulators.
  
     0.583
RAM_12565
COG1396 Predicted transcriptional regulators.
  
     0.577
RAM_43825
Hypothetical protein.
  
     0.563
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.