STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01380Carboxymethylenebutenolidase; COG0412 Dienelactone hydrolase and related enzymes. (209 aa)    
Predicted Functional Partners:
CatA
Catechol 1,2-dioxygenase; COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
   
 
 0.904
RAM_25825
Mandelate racemase/muconate lactonizing enzyme; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
   
 
  0.901
RAM_41215
Hypothetical protein.
  
     0.666
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
       0.622
AcsA
acetoacetyl-CoA synthase; COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
  
    0.611
RAM_25505
Carboxymethylenebutenolidase; COG0412 Dienelactone hydrolase and related enzymes.
  
     0.571
RAM_00950
Hypothetical protein.
 
     0.524
RAM_00700
Hypothetical protein.
  
     0.499
RAM_00770
Hypothetical protein.
  
     0.496
RAM_35915
Carboxymethylenebutenolidase; COG0412 Dienelactone hydrolase and related enzymes.
  
     0.494
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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