STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01400COG3325 Chitinase. (542 aa)    
Predicted Functional Partners:
RAM_34245
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
 
 0.831
RAM_01405
Chitinase.
 
   
0.801
RAM_07880
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
 0.776
RAM_31120
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
  
 0.775
RAM_42445
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
  
 0.774
RAM_25800
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
  
 0.768
NagZ
beta-N-acetylhexosaminidase; COG3525 N-acetyl-beta-hexosaminidase.
 
  
 0.762
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
 0.744
NagZ-2
beta-N-acetylhexosaminidase; COG1472 Beta-glucosidase-related glycosidases.
  
 
 0.671
RAM_41745
COG1472 Beta-glucosidase-related glycosidases.
   
 
 0.667
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.