STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01405Chitinase. (448 aa)    
Predicted Functional Partners:
RAM_01400
COG3325 Chitinase.
 
   
0.801
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
   
 0.699
RAM_37790
Glycoside hydrolase family 48.
  
     0.604
RAM_23500
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
  
     0.596
RAM_43020
Hypothetical protein.
 
     0.545
RAM_07125
COG3397 Uncharacterized protein conserved in bacteria.
  
   
 0.525
RAM_00675
Endo-1,3-beta-glucanase; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
   
 0.514
RAM_35460
Mycodextranase.
 
   
 0.495
RAM_41845
TlpA-like family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.474
RAM_35455
Mycodextranase.
  
     0.472
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.