STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01415COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
RAM_01410
2,2-dialkylglycine decarboxylase; COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.692
RAM_30105
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.573
RAM_18695
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.538
RAM_23520
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.531
RAM_39380
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.515
RAM_35710
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.507
RAM_37190
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.486
RAM_42910
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.469
RAM_20465
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.458
HcaR-4
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.453
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.