STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01420TPR repeat-containing protein; COG0790 FOG: TPR repeat, SEL1 subfamily. (347 aa)    
Predicted Functional Partners:
RAM_39810
Hypothetical protein.
    
 0.768
AcuC
Acetoin utilization protein AcuC; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
  
 
 0.611
RAM_00800
Hypothetical protein; COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
    
 0.599
hisS
COG0124 Histidyl-tRNA synthetase.
    
 0.599
RAM_24665
ATPase; COG0464 ATPases of the AAA+ class.
   
 0.530
RAM_43620
ATPase; COG0464 ATPases of the AAA+ class.
   
 0.530
RAM_43965
ATPase; COG0464 ATPases of the AAA+ class.
   
 0.530
RAM_29635
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.525
RAM_01425
Hypothetical protein.
       0.508
RAM_01430
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
   
   0.504
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.