STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01420TPR repeat-containing protein; COG0790 FOG: TPR repeat, SEL1 subfamily. (347 aa)    
Predicted Functional Partners:
RAM_24665
ATPase; COG0464 ATPases of the AAA+ class.
  
 0.708
RAM_43620
ATPase; COG0464 ATPases of the AAA+ class.
  
 0.708
RAM_43965
ATPase; COG0464 ATPases of the AAA+ class.
  
 0.708
RAM_01430
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
   
 
 0.543
RAM_01425
Hypothetical protein.
       0.508
RAM_39810
Hypothetical protein.
    
 0.501
DnaK-2
Molecular chaperone DnaK; COG4249 Uncharacterized protein containing caspase domain; Belongs to the heat shock protein 70 family.
   
 
 0.445
RAM_38980
Hypothetical protein.
   
 
 0.413
RAM_47215
Membrane-associated oxidoreductase.
   
 
 0.413
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.