STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01425Hypothetical protein. (223 aa)    
Predicted Functional Partners:
RAM_01430
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.763
RAM_32240
Hypothetical protein.
  
    0.596
RAM_19035
Esterase/lipase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
    0.590
RAM_12060
Hypothetical protein.
  
     0.576
RAM_39990
COG4412 Uncharacterized protein conserved in bacteria.
  
     0.559
RAM_40795
Hypothetical protein.
  
   
 0.545
AbfA-10
alpha-N-arabinofuranosidase.
  
     0.536
AbfA-12
alpha-N-arabinofuranosidase.
  
     0.532
RAM_01420
TPR repeat-containing protein; COG0790 FOG: TPR repeat, SEL1 subfamily.
       0.508
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
     
 0.496
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.