STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01560COG1289 Predicted membrane protein. (655 aa)    
Predicted Functional Partners:
RAM_41645
Hypothetical protein.
  
     0.719
RAM_01565
Hypothetical protein.
       0.717
RAM_14555
Hypothetical protein.
  
     0.701
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
   
    0.670
RAM_09835
Hypothetical protein.
  
     0.667
RAM_46595
Hypothetical protein; COG0850 Septum formation inhibitor.
  
     0.665
RAM_47665
Hypothetical protein.
  
     0.658
RAM_13620
Hypothetical protein.
  
     0.653
RAM_01555
Hypothetical protein.
 
     0.643
RAM_44150
Hypothetical protein.
  
     0.621
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.