STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FadHNADPH-dependent 2,4-dienoyl-CoA reductase; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family. (670 aa)    
Predicted Functional Partners:
GltB
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
  
 
 0.999
GltB-2
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
  
 
 0.999
FixA
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.965
AscD
COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 0.956
FixB
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.917
PaaE-2
Phenylacetic acid degradation oxidoreductase; COG3239 Fatty acid desaturase.
  
 0.804
RAM_17995
COG0069 Glutamate synthase domain 2; Belongs to the glutamate synthase family.
 
 
 0.789
RAM_24190
COG0069 Glutamate synthase domain 2.
  
 
 0.734
FadB-3
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
  
 0.725
RAM_10615
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 0.719
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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