STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01585Patatin-like phospholipase; COG4667 Predicted esterase of the alpha-beta hydrolase superfamily. (309 aa)    
Predicted Functional Partners:
RAM_01580
COG1695 Predicted transcriptional regulators.
  
    0.540
RAM_33475
Two-component system response regulator; COG2203 FOG: GAF domain.
  
    0.460
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
  
    0.455
RAM_00840
Two-component system sensor kinase; COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.
   
    0.446
RAM_20385
GAF domain-containing protein; COG2203 FOG: GAF domain.
   
    0.446
RAM_22295
Two-component system sensor kinase; COG2203 FOG: GAF domain.
   
    0.446
DevS
Two-component system sensor kinase; COG2203 FOG: GAF domain.
   
    0.446
RAM_28450
Two-component system response regulator; COG2203 FOG: GAF domain.
   
    0.446
RAM_30525
GAF domain-containing protein; COG2203 FOG: GAF domain.
   
    0.446
RAM_33565
Hypothetical protein.
   
    0.446
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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