STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01610Alanine rich lipoprotein LppW. (298 aa)    
Predicted Functional Partners:
RAM_41805
Hypothetical protein; COG2367 Beta-lactamase class A.
 
     0.662
RAM_01615
Hypothetical protein.
       0.500
RAM_21115
Hypothetical protein.
  
     0.499
RAM_11265
Hypothetical protein.
  
     0.476
RAM_05370
Hypothetical protein.
  
     0.461
RAM_30875
Hypothetical protein.
  
     0.437
RAM_16695
Histidine kinase-like ATPase.
  
     0.423
RAM_33255
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
     0.422
RAM_12905
Hypothetical protein.
  
     0.406
RAM_47860
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
   
 0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.