STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01615Hypothetical protein. (237 aa)    
Predicted Functional Partners:
RAM_41605
Hypothetical protein.
  
     0.608
RAM_21980
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.584
RAM_42180
Integral membrane protein.
  
     0.538
RAM_41595
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.534
RAM_07630
Aminotransferase class V; COG0520 Selenocysteine lyase.
  
     0.529
RAM_03795
Beta-lactamase-like protein; COG2367 Beta-lactamase class A.
  
     0.522
RAM_07560
Hypothetical protein.
  
     0.509
RAM_01610
Alanine rich lipoprotein LppW.
       0.500
RAM_23020
Hypothetical protein.
  
     0.498
RAM_44440
alpha-L-fucosidase/alpha-galactosidase.
  
     0.495
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.