STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PcaB3-carboxy-cis,cis-muconate cycloisomerase; COG0015 Adenylosuccinate lyase. (535 aa)    
Predicted Functional Partners:
PcaG
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.992
PcaH
COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.990
PcaC-2
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
 
 0.989
PcaC-4
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
 
 0.954
RAM_26400
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
 
 0.940
PcaC-6
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
 
 0.940
PcaC-3
COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
 
 
 0.938
RAM_31365
Hypothetical protein; COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit.
  
 
 0.921
PcaC-5
Carboxymuconolactone decarboxylase.
  
 
 0.921
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
 
 
 0.843
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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