STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01655Lipoprotein; COG1686 D-alanyl-D-alanine carboxypeptidase. (293 aa)    
Predicted Functional Partners:
RAM_41845
TlpA-like family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
    0.631
RAM_23500
COG3979 Uncharacterized protein contain chitin-binding domain type 3.
 
     0.593
RAM_05990
Hypothetical protein.
  
     0.547
RAM_22000
Hypothetical protein.
  
     0.544
RAM_12905
Hypothetical protein.
  
     0.536
RAM_19335
Hypothetical protein.
  
     0.506
RAM_41805
Hypothetical protein; COG2367 Beta-lactamase class A.
  
     0.506
RAM_22275
Hypothetical protein.
 
   
 0.491
RAM_12925
Hypothetical protein.
 
   
 0.490
RAM_01660
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
       0.483
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.