STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01705Hypothetical protein. (121 aa)    
Predicted Functional Partners:
RAM_01700
Integral membrane protein.
 
     0.950
RAM_02030
COG1396 Predicted transcriptional regulators.
  
     0.580
RAM_25520
Major facilitator transporter; COG2211 Na+/melibiose symporter and related transporters.
  
     0.557
RAM_41645
Hypothetical protein.
 
     0.531
RAM_12475
COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
     0.519
RAM_47170
Transglycosylase associated protein.
  
     0.507
RAM_02060
Hypothetical protein.
  
     0.479
RAM_47705
Hypothetical protein.
  
     0.473
RAM_44900
Hypothetical protein.
  
     0.464
PolA
COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.
  
     0.463
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.