STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_01710COG0515 Serine/threonine protein kinase. (855 aa)    
Predicted Functional Partners:
RAM_45130
Hypothetical protein.
  
    0.617
RAM_41115
Hypothetical protein.
  
     0.599
RAM_34430
Hypothetical protein; COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
 
    0.483
RAM_38950
COG3469 Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.478
RAM_32625
SARP family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
  
   
 0.459
RAM_05880
COG2971 Predicted N-acetylglucosamine kinase.
  
    0.450
ActI
3-oxoacyl-ACP synthase acylcarrier protein; COG0236 Acyl carrier protein.
 
    0.426
RAM_01405
Chitinase.
  
     0.421
RAM_39185
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.418
RAM_05835
Hypothetical protein.
  
     0.409
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.